WebWe used GenomeScope (RRID:SCR_017014) to conduct a genome survey and visualise the k-mer plot . While we did not deem the k -mer counting method sufficiently accurate for genome size estimation [ 38 ] , we used GenomeScope to estimate the genome-wide heterozygosity rates output which was 0.869–0.889%. WebNov 9, 2024 · Raw reads from genome sequencing and assembly are deposited at the China National Gene Bank under reference number CNP0001160, which contains sample information (CNS0315939), Hi-C raw data (CNX0286336) and stLFR raw data (CNX0286337). The project also has been deposited at NCBI under accession ID …
A chromosome-level genome assembly of Plantago ovata
WebAnalyses were performed using the R software environment (RRID: SCR_001905). For in vitro functional assays, differences between groups were assessed by the Kruskal-Wallis and Dunn’s multiple comparison test using GraphPad Prism 8 (GraphPad Software, San Diego, CA, USA, RRID: SCR_002798). Three independent experiments were performed for … WebJun 25, 2024 · Jellyfish (RRID:SCR_005491) 30 and genomescope2 (RRID:SCR_017014) 31,32 were used to estimate the size, unique sequence content, and heterozygosity of the O. australiensis KR genome using 17-mers ... muddy\\u0027s buddies recipe
SciCrunch - Wikipedia
WebNov 9, 2024 · Raw reads from genome sequencing and assembly are deposited at the China National Gene Bank under reference number CNP0001160, which contains sample … WebSep 19, 2024 · Here, we present a highly contiguous, fully phased, chromosome-level genome of ‘Honeycrisp’ apples, using PacBio HiFi, Omni-C, and Illumina sequencing … WebMar 1, 2024 · 2.2. Genome assembly and assessment. Illumina paired-end reads were used as the first quality control by FASTP (fastp, RRID: SCR_016962) [16] with the default parameter.JELLYFISH (v2.2.10) (Jellyfish, RRID: SCR_005491) [17] and PLATANUS (v2.2.2) (Platanus, RRID: SCR_015531) [18] were employed to estimate the genome size based on … muddy\\u0027s ceramic studio